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刘世名

文章来源:研究生工作处       

 

刘世名,博士,研究员,博士生导师。于1999年7月获华南理工大学博士学位。主要从事大豆孢囊线虫(SCN)抗性基因定位、克隆、功能鉴定及其抗性机制,大豆与大豆孢囊线虫相互作用,以及大豆突变育种等方面的研究。克隆了2个主要的大豆孢囊线虫抗性基因Rhg4 GmSHMT08rhg1-a GmSNAP18,揭示了一种一碳代谢参与的植物抗病新机制,开发了多个大规模EMS (Ethyl methanesulfonate) 化学诱变大豆突变群体及建立了高通量大豆TILLING (Targeted Induced Local Lesions IN Genomes) 突变体筛选方法,建立了大豆CRISPR/Cas基因组编辑技术体系。成果在Nature、Nature Communications 、Plant Biotechnology Journal、Plant Physiology、The Plant Journal及Theoretical and Applied Genetics等期刊上发表。获2项美国专利和1项中国专利授权。Email: liushiming01@caas.cn; smliuhn@163.com。

主要学术论文、书章节及专利 (*, 并列第一作者; **, 通讯作者):

  1. Liu S*, Kandoth PK*, Warren SD, Yechel G, Heinz R, Alden J, Yang C, Jamai A, Ei-Mellouki T, Juvale PS, Hill J, Baum TJ, Cianzio S, Whitham SA, Korkin D, Mitchum MG, Meksem K. A soybean cyst nematode resistance gene points to a new mechanism of plant resistance to pathogens. Nature, 2012, 492: 256-260
  2. Liu S, Kandoth PK, Lakhssassi N, Kang J, Colantonio V, Heinz R, Yechel G, Zhou Z, Bekal S, Dapprich J, Rotter B, Cianzio S, Mitchum MG, Meksem K. The soybean GmSNAP18 gene underlies two types of resistance to soybean cyst nematode. Nature Communications, 2017, 8: 14822
  3. Abdulsalam S, Peng H, Liu SM, Huang WK, Kong LA, Peng DL. Molecular and morphological characterization of stunt nematodes of wheat, maize, and rice in the savannahs of northern Nigeria. Journal of Integrative Agriculture, doi: 10.1016/S2095-3119(21)63696-1
  4. Jin N, Liu SM, Peng H, Huang WK, Kong LA, Peng DL. Effect of Aspergillus niger NBC001 on soybean rhizosphere microbial community in the soybean cyst nematode-infested field. Journal of Integrative Agriculture, doi: 10.1016/S2095-3119(20)63467-0
  5. Shi X, Chen Q, Liu S, Wang J, Peng D, Kong L. Combining targeted metabolite analyses and transcriptomics to reveal the specific chemical composition and associated genes in the incompatible soybean variety PI437654 infected with soybean cyst nematode HG1.2.3.5.7. BMC Plant Biology, 2021: 21: 217
  6. Lakhssassi N, Zhou Z, Cullen MA, Badad O, El Baze A, Chetto O, Embaby MG, Knizia D, Liu S, Neves LG, Meksem K. TILLING-by-sequencing+ to decipher oil biosynthesis pathway in soybeans: A new and effective platform for high-throughput gene functional analysis. International Journal of Molecular Sciences, 2021, 22: 4219 
  7. Lakhssassi N, Zhou Z, Liu SPiya S, Cullen MA, El Baze A, Knizia D, Patil GB, Badad O, Embaby MB, Meksem J, Lakhssassi A, AbuGhazaleh A, Hewezi T, Meksem K. Soybean TILLING-by-sequencing+ reveals the role of novel GmSACPD members in the unsaturated fatty acid biosynthesis while maintaining healthy nodules. Journal of Experimental Botany, 2020, 71: 6969-6987
  8. Cui J, Jiao Y, Zhou B, Ren H, Li H, Liu S, Jiang S, Meng H, Li M, Dababat AA, Peng D. Pathotype, resistance classification and seed coating control of Heterodera avenae and H. filipjevi in the North China Plain. Plant Disease, 2020, 104: 3230-3238
  9. Xiang C, Yang X, Peng D, Kang H, Liu M, Li W, Huang W**, Liu S**. Proteome-wide analyses provide new insights into the compatible interaction of rice with the root-knot nematode Meloidogyne graminicola. International Journal of Molecular Sciences, 2020, 20: 5640
  10. Zheng N, Li T, Dittman JD, Su J, Li R, Gassmann W, Peng D, Whitham SA**, Liu S**, Yang B**. CRISPR/Cas9-based gene editing using egg cell-specific promoters in Arabidopsis and soybean. Frontiers in Plant Science, 2020, 11: 800
  11. Lakhssassi N, Piya S, Bekal S, Liu S, Zhou Z, Bergounioux C, Miao L, Meksem J, Lakhssassi A, Jones K, Kassem MA, Benhamed M, Bendahmane A, Lambert K, Boualem A, Hewezi T, Meksem K. A pathogenesis related protein GmPR08-Bet VI promotes a molecular interaction between the GmSHMT08 and GmSNAP18 in resistance to Heterodera glycines. Plant Biotechnology Journal, 2020, 18: 1810-1829
  12. Xiang C, Liu Y, Liu SM, Huang YF, Kong LA, Peng H, Liu MY, Liu J, Peng DL, Huang WK. αβ-Dehydrocurvularin isolated from the fungus Aspergillus welwitschiae effectively inhibited the behaviour and development of the root-knot nematode Meloidogyne graminicola in rice roots. BMC Microbiology, 2020, 20: 48.
  13. Wang N, Peng H, Liu SM, Huang WK, Clarke JL, Holgado R, Peng DL. Molecular characterization and functional analysis of two new lysozyme genes from soybean cyst nematode (Heterodera glycines). Journal of Integrative Agriculture, 2019, 18: 2806-2813
  14. Liu Y, Ding Z, Peng DL, Liu SM, Kong LA, Peng H, Xiang C, Li ZC, Huang WK. Evaluation of biocontrol potential of Aspergillus welwitschiae against root-knot nematode Meloidogyne graminicola in rice (Oryza sativa L.). Journal of Integrative Agriculture, 2019, 18: 2561-2570
  15. Zhang L, Huang W, Peng D, Liu S**. Comparative genomic analyses of two segregating mutants reveal seven genes likely involved in resistance to Fusarium equiseti in soybean via whole genome re-sequencing. Theoretical and Applied Genetics, 2019, 132: 2997-3008
  16. Liu S**, Ge F, Huang W, Lightfoot DA, Peng D. Effective identification of soybean candidate genes involved in resistance to soybean cyst nematode via direct whole genome re-sequencing of two segregating mutants. Theoretical and Applied Genetics, 2019, 132: 2677-2687
  17. Jiang S, Wang D, Yan S, Liu S, Liu B, Kang H, Wang GL. Dissection of the genetic architecture of rice tillering using a genome-wide association study. Rice, 2019, 12: 43
  18. Luo S, Liu S, Kong L, Peng H, Huang W, Jian H, Pend D. Two venom allergen-like proteins, HaVAP1 and HaVAP2, are involved in the parasitism of Heterodera avenae. Molecular Plant Pathology, 2019, 20: 471-484
  19. Qiao F, Kong L, Peng H, Huang WK, Wu DQ, Liu SM, Clarke JL, Qiu DW, Peng DL. Transcriptional profiling of wheat (Triticum aestivum L.) during compatible interaction with cereal cyst nematode Heterodera avenae. Scientific Reports, 2019, 9: 2184
  20. Jin N, Liu SM, Peng H, Huang WK, Kong LA, Wu YH, Chen Y, Ge FY, Jian H, Peng DL. Isolation and characterization of Aspergillus niger NBC001 underlying suppression against Heterodera glycines. Scientific Reports, 2019, 9: 591
  21. Meksem K, Liu S, Mitchum MG, Kandoth PK, Lightfoot DA. Soybean resistant to cyst nematodes. US Patent: US10294489B2, Granted date: May 21, 2019
  22. Ge FY, Zheng N, Zhang LP, Huang WK, Peng DL, Liu SM**. Chemical mutagenesis and soybean mutants potential for identification of novel genes conferring resistance to soybean cyst nematode. Journal of Integrative Agriculture, 2018, 17: 2734-2744
  23. Akond M, Yuan J, Liu S, Kantartzi SK, Meksem K, Bellaloui N, Lightfoot DA, Kassem1MA. Detection of QTL underlying seed quality components in soybean [Glycine max (L.) Merr.]. Canadian Journal of Plant Science, 2018, 98: 881-888
  24. Zheng N, Zhang LP, Ge FY, Huang WK, Kong LA, Peng DL, Liu SM**. Conidia of one Fusarium solani isolate from a soybean-production field enable to be virulent to soybean and make soybean seedlings wilted. Journal of Integrative Agriculture, 2018, 17: 2042-2053
  25. Zhan LP, Peng DL, Wang XL, Kong LA, Peng H, Liu SM, Liu Y, Huang WK. Priming effect of root-applied silicon on the enhancement of induced resistance to the root-knot nematode Meloidogyne graminicola in rice. BMC Plant Biology, 2018, 18: 50
  26. Zhan LP, Ding Z, Peng DL, Peng H, Kong LA, Liu SM, Liu Y, Li ZC, Huang WK. Evaluation of Chinese rice varieties resistant to the root-knot nematode Meloidogyne graminicola. Journal of Integrative Agriculture. 2018, 17: 621-630
  27. Meksem K, Liu S, Kandoth PK, Mitchum MG. Soybean resistant to cyst nematodes. US Patent: US10070614B2, Granted date: Sep. 11, 2018
  28. Liu S, Lakhssassi N, Zhou Z, Colantonio V, Kassem MA, Meksem K. Soybean genomic libraries, TILLING, and genetic resources. In: The Soybean Genome (eds. Nguyen HT and Bhattacharyya MK). Springer International Publishing AG. ISBN: 978-3-319-64196-6. 2017, pp131-149
  29. Kandoth PK, Liu S, Prenger E, Ludwig A, Lakhssassi N, Heinz R, Zhou Z, Howland A, Gunther J, Warren S, Dhroso A, Lafayette P, Tucker D, Johnson S, Anderson J, Alaswad A, Cianzio SR, Parrott W, Korkin D, Meksem K, Mitchum MG. Systematic mutagenesis of serine hydroxymethyltransferase reveals an essential role in nematode resistance. Plant Physiology, 2017, 175: 1370-1380
  30. Cui J, Peng H, Huang W, Liu S, Wu D, Kong L, He W, Peng D. Phenotype and cellular response of wheat lines carrying Cre genes to Heterodera avenae pathotype Ha91. Plant Disease, 2017, 101: 1885-1894
  31. Mirzael S, Batley J, El-Mellouki T, Liu S, Meksem K, Brett F, Gresshoff P.  Neodiverification of homeologous CLAVATA1-like receptor kinase genes in soybean leads to distinct developmental outcome. Scientific Reports, 2017, 7: 8878
  32. Lakhssassi N, Colantonio V, Flowers ND, Zhou Z, Henry J, Liu S, Meksem K. Mutational analysis of SACPD-C reveals an impact of stearic acid in leaf and nodule structure. Plant Physiology, 2017, 174: 1531-1543
  33. Hong Y, Duo H, Hong J, Yang J, Liu S, Yu L, Yi T. Resequencing and comparison of whole mitochondrial genome to gain insight into the evolutionary status of the Shengnongjia golden snub-nosed monkey (SNJ R. roxellana). Ecology and Evolution, 2017, 7: 4456-4461
  34. Lakhssassi N, Liu S, Bekal S, Zhou Z, Colantonio V, Lambert K, Barakat A, Meksem K. Characterization of the soluble NSF attachment protein gene family identifies two members involved in additive resistance to a plant pathogen. Scientific Reports, 2017, 7: 45226
  35. Cui JK, Peng H, Liu SM, Orakci GE, Huang WK, Imren M, Dababat AA, Peng DL. Occurrence, identification and phylogenetic analyses of cereal cyst nematodes (Heterodera spp.) in Turkey. Journal of Integrative Agriculture, 2017, 16: 1767-1776
  36. Lakhssassi N, Zhou Z, Liu S, Colantonio V, AbuGhazaleh A, Meksem K. Characterization of the FAD2 gene family reveals the limitations of gel-based TILLING in genes with high copy number. Frontiers in Plant Science, 2017, 8: 324
  37. Huang WK, Wu QS, Peng H, Kong LA, Liu SM, Yin HQ, Cui RQ, Zhan LP, Cui JK, Peng DL. Mutations in Acetylcholinesterase2 (ace2) increase the insensitivity of acetylcholinesterase to fosthiazate in the root-knot nematode Meloidogyne incognita. Scientific Reports, 2016, 6: 38102
  38. Cui J, Erginbas-Orakci G, Peng H, Huang W, Liu S, Qiao F, Elekcioglu H, Imren M, Dababat AA, Peng D. First report of sugar beet nematode, Heterodera schachtii Schmidt, 1871 (Nemata: Heteroderidae) in sugar beet growing areas of ?anl?urfa, Turkey. Turkish Journal of Entomology, 2016, 40: 303-314
  39. Peng H, Cui J, Long H, Huang W, Kong L, Liu S, He W, Hu X, Peng D. Novel pectate lyase genes of Heterodera glycines play key roles in the early stage of parasitism. PLoS One, 2016, 11: e0149959 
  40. Huang WK, Cui JK, Liu SM, Kong LA, Wu QS, Peng H, He WT, Sun JH, Peng DL. Testing various biocontrol agents against root-knot nematode (Meloidogyne incognita) in cucumber plants identifies a combination of Syncephalastrum racemosum and Paecilomyces lilacinus as being the most effective. Biological Control, 2016, 92: 31-37
  41. Shi Z, Liu S, Noe J, Arelli P, Meksem K, Li Z. SNP identification and marker assay development for high-throughput selection of soybean cyst nematode resistance. BMC Genomics, 2015, 16: 314
  42. Kong LA, Wu DQ, Huang WK, Peng H, Wang GF, Cui JK, Liu SM, Li ZG, Yang J, Peng DL. Large-scale identification of wheat genes resistant to cereal cyst nematode Heterodera avenae using comparative transcriptomic analysis. BMC Genomics, 2015, 16: 801
  43. Akond M, Liu S, Kantartzi SK, Meksem K, Bellaloui N, Lightfoot DA, Yuan J, Wang D, Anderson J, Kassem MA. A SNP genetic linkage map based on the 'Hamilton' by 'Spencer' recombinant inbred line (RIL) population identified QTL for seed isoflavone contents in soybean. Plant Breeding, 2015, 134: 580-588
  44. Cui JK, Huang WK, Peng H, Liu S, Wang GF, Kong LA, Peng DL. A new pathotype characterization of Daxing and Huangyuan populations of cereal cyst nematode (Heterodera avenae) in China. Journal of Integrative Agriculture, 2015, 14: 724-731
  45. Akond M, Liu S, Kantartzi SK, Meksem K, Bellaloui N, Lightfoot DA, Kassem MA. Quantitative trait loci underlying seed sugars content in “MD96-5722” by “Spencer” recombinant inbred line population of soybean. Food and Nutrition Sciences, 2015, 6: 964-973
  46. Khandaker L, Akond M, Liu S, Kantartzi SK, Meksem K, Bellaloui N, Lightfoot DA, Kassem MA. Mapping of QTL associated with seed amino acids content in “MD96-5722” by “Spencer” RIL population of soybean using SNP markers. Food and Nutrition Sciences, 2015, 6: 974-984
  47. Akond M, Liu S, Kantartzi SK, Meksem K, Bellaloui N, Lightfoot DA, Yuan J, Wang D, Kassem MA. Quantitative trait loci for seed isoflavone content in ‘MD96-5722’ by ‘Spenser’ recombinant inbred lines of soybean. Journal of Agricultural and Food Chemistry, 2014, 62: 1464-1468
  48. Akond M, Liu S, Boney M, Kantartzi SK, Meksem K, Bellaloui N, Lightfoot DA, Kassem MA. Identification of quantitative trait loci (QTL) underlying protein, oil, and five major fatty acids’ contents in soybean. American Journal of Plant Sciences, 2014, 5: 158-167
  49. Akond M, Liu S, Schoener L, Anderson JA, Kantartzi SK, Meksem K, Song Q, Wang D, Wen Z, Lightfoot DA, Kassem MA. A SNP-based genetic linkage map of soybean using the SoyS?NP6K Illumina Infinium BeadChip Genotyping Array. Journal of Plant Genome Sciences, 2013, 1: 80-89
  50. Liu X*, Liu S*, Jami A, Bendahmane A, Lightfoot DA, Mitchum MG, Meksem K. Soybean cyst nematode resistance in soybean is independent of the Rhg4 locus LRR-RLK gene. Functional and Integrative Genomics, 2011, 11: 539-549
  51. Zhou B, Wang J, Pu Y, Zhu M, Liu S, Liang S. Optimization of culture medium for yellow pigments production with Monascus anka mutant using response surface methodology. European Food Research and Technology, 2009, 228: 895-901
  52. Meksem K, Liu S, Liu X, Jamai A, Mitchum MG, Bendahmane A, El-Mellouki T. TILLING: A reverse genetics and a functional genomics tool in soybean. In: The Handbook of Plant Functional Genomics: Concepts and Protocols (eds. Kahl G and Meksem K). WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim. ISBN: 978-3-527-31885-8. 2008, pp251-265
  53. Cooper JL, Till BJ, Laport RG, Darlow MC, Kleffner JM, Jamai A, El-Mellouki T, Liu S, Ritchie R, Nielsen N, Bilyeu KD, Meksem K, Comai L, Henikoff S. TILLING to detect induced mutations in soybean. BMC Plant Biology, 2008, 8: 9
  54. Tomita R, Murai J, Miura Y, Ishihara H, Liu S, Kubotera Y, Honda A, Hatta R, Kuroda T, Hamada H, Sakamoto M, Munemura I, Nunomura O, Ishikawa K, Genda Y, Kawasaki S, Suzuki K, Meksem K, Kobayashi K. Fine mapping and DNA fiber FISH analysis locates the tobamovirus resistance gene L 3 of Capsicum chinense in a 400-kb region of R-like genes cluster embedded in highly repetitive sequences. Theoretical and Applied Genetics, 2008, 117: 1107-1118
  55. Liu S*, Yu Y*, Ruan Y*, Meyer D, Wolff M, Xu L, Wang L, Steinmetz, Shen WH. Plant SET- and RING-associated domain proteins in heterochromatinization. The Plant Journal, 2007, 52: 914-926
  56. Liu S**, Chen K, Schliemann W, Strack D. Isolation and identification of arctiin and arctigenin in burdock (Arctium lappa L.) leaves by polyamide column chromatography in combination with high performance liquid chromatography and electrospray ionization-mass spectrometry. Phytochemical Analysis, 2005, 16: 86-89 
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